Detailed information of SNP:
|
SNP ID:
sf0224245432(Gbrowse)
Chromosome: chr02 Position: 24245432 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 86.18% | 13.82% |
| All Indica | 794 | 88.79% | 11.21% |
| All Japonica | 489 | 86.30% | 13.70% |
| Aus | 65 | 70.77% | 29.23% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 210 | 67.62% | 32.38% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 330 | 95.15% | 4.85% |
| Tropical Japonica | 93 | 63.44% | 36.56% |
| Japonica Intermediate | 66 | 74.24% | 25.76% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224245432 | A->C | INTERGENIC | None |