Detailed information of SNP:
|
SNP ID:
sf0224253861(Gbrowse)
Chromosome: chr02 Position: 24253861 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 95.97% | 4.03% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 491 | 96.33% | 3.67% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 332 | 97.59% | 2.41% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224253861 | T->A | INTERGENIC | None |