Detailed information of SNP:
|
SNP ID:
sf0224255066(Gbrowse)
Chromosome: chr02 Position: 24255066 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 76.85% | 23.15% |
| All Indica | 791 | 69.28% | 30.72% |
| All Japonica | 493 | 86.21% | 13.79% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 375 | 65.60% | 34.40% |
| Indica II | 210 | 69.05% | 30.95% |
| Indica Intermediate | 206 | 76.21% | 23.79% |
| Temperate Japonica | 335 | 87.46% | 12.54% |
| Tropical Japonica | 90 | 72.22% | 27.78% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224255066 | A->G | INTERGENIC | None |