Detailed information of SNP:
|
SNP ID:
sf0224257914(Gbrowse)
Chromosome: chr02 Position: 24257914 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 64.91% | 35.09% |
| All Indica | 793 | 79.32% | 20.68% |
| All Japonica | 489 | 42.94% | 57.06% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 210 | 60.00% | 40.00% |
| Indica Intermediate | 209 | 68.90% | 31.10% |
| Temperate Japonica | 328 | 45.73% | 54.27% |
| Tropical Japonica | 93 | 45.16% | 54.84% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224257914 | T->G | LOC_Os02g40070(LOC_Os02g40070.1) | INTRON |