Detailed information of SNP:
|
SNP ID:
sf0224257999(Gbrowse)
Chromosome: chr02 Position: 24257999 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 56.58% | 43.42% |
| All Indica | 799 | 73.34% | 26.66% |
| All Japonica | 493 | 29.61% | 70.39% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 52.11% | 47.89% |
| Indica Intermediate | 211 | 59.72% | 40.28% |
| Temperate Japonica | 332 | 31.02% | 68.98% |
| Tropical Japonica | 93 | 31.18% | 68.82% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224257999 | A->T | LOC_Os02g40070(LOC_Os02g40070.1) | INTRON |