Detailed information of SNP:
|
SNP ID:
sf0224258784(Gbrowse)
Chromosome: chr02 Position: 24258784 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 79.53% | 20.47% |
| All Indica | 799 | 85.61% | 14.39% |
| All Japonica | 490 | 66.73% | 33.27% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 70.14% | 29.86% |
| Temperate Japonica | 329 | 58.66% | 41.34% |
| Tropical Japonica | 93 | 83.87% | 16.13% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224258784 | A->C | LOC_Os02g40070(LOC_Os02g40070.1) | Synonymous |