Detailed information of SNP:
|
SNP ID:
sf0224261724(Gbrowse)
Chromosome: chr02 Position: 24261724 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 76.13% | 23.87% |
| All Indica | 797 | 69.39% | 30.61% |
| All Japonica | 496 | 84.68% | 15.32% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 58.93% | 41.07% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 209 | 77.51% | 22.49% |
| Temperate Japonica | 334 | 82.93% | 17.07% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224261724 | C->T | INTERGENIC | None |