Detailed information of SNP:
|
SNP ID:
sf0224268210(Gbrowse)
Chromosome: chr02 Position: 24268210 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 85.77% | 14.23% |
| All Indica | 792 | 88.13% | 11.87% |
| All Japonica | 491 | 83.91% | 16.09% |
| Aus | 66 | 68.18% | 31.82% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 207 | 77.29% | 22.71% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 335 | 88.36% | 11.64% |
| Tropical Japonica | 92 | 80.43% | 19.57% |
| Japonica Intermediate | 64 | 65.62% | 34.38% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224268210 | G->A | INTERGENIC | None |