Detailed information of SNP:
|
SNP ID:
sf0224268211(Gbrowse)
Chromosome: chr02 Position: 24268211 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 65.19% | 34.81% |
| All Indica | 784 | 54.59% | 45.41% |
| All Japonica | 495 | 82.42% | 17.58% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 366 | 48.09% | 51.91% |
| Indica II | 207 | 62.80% | 37.20% |
| Indica Intermediate | 211 | 57.82% | 42.18% |
| Temperate Japonica | 334 | 82.93% | 17.07% |
| Tropical Japonica | 93 | 80.65% | 19.35% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 12 | 16.67% | 83.33% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224268211 | G->A | INTERGENIC | None |