Detailed information of SNP:
|
SNP ID:
sf0224268428(Gbrowse)
Chromosome: chr02 Position: 24268428 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 88.90% | 11.10% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 485 | 70.10% | 29.90% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 329 | 65.05% | 34.95% |
| Tropical Japonica | 89 | 79.78% | 20.22% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224268428 | C->T | INTERGENIC | None |