Detailed information of SNP:
|
SNP ID:
sf0224268527(Gbrowse)
Chromosome: chr02 Position: 24268527 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 72.35% | 27.65% |
| All Indica | 796 | 63.94% | 36.06% |
| All Japonica | 496 | 85.48% | 14.52% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 374 | 60.16% | 39.84% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 209 | 66.03% | 33.97% |
| Temperate Japonica | 335 | 85.67% | 14.33% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224268527 | C->T | INTERGENIC | None |