Detailed information of SNP:
|
SNP ID:
sf0224272578(Gbrowse)
Chromosome: chr02 Position: 24272578 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 97.51% | 2.49% |
| All Indica | 793 | 99.62% | 0.38% |
| All Japonica | 491 | 93.69% | 6.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 99.03% | 0.97% |
| Temperate Japonica | 329 | 92.10% | 7.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224272578 | G->T | LOC_Os02g40100(LOC_Os02g40100.1) | Non-Synonymous SNP |