Detailed information of SNP:
|
SNP ID:
sf0224279119(Gbrowse)
Chromosome: chr02 Position: 24279119 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 60.47% | 39.53% |
| All Indica | 795 | 66.42% | 33.58% |
| All Japonica | 493 | 54.36% | 45.64% |
| Aus | 65 | 32.31% | 67.69% |
| Indica I | 374 | 86.63% | 13.37% |
| Indica II | 212 | 37.74% | 62.26% |
| Indica Intermediate | 209 | 59.33% | 40.67% |
| Temperate Japonica | 333 | 55.86% | 44.14% |
| Tropical Japonica | 92 | 54.35% | 45.65% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224279119 | A->T | INTERGENIC | None |