Detailed information of SNP:
|
SNP ID:
sf0224279740(Gbrowse)
Chromosome: chr02 Position: 24279740 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 71.54% | 28.46% |
| All Indica | 793 | 67.21% | 32.79% |
| All Japonica | 493 | 79.72% | 20.28% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 52.80% | 47.20% |
| Indica II | 209 | 88.52% | 11.48% |
| Indica Intermediate | 209 | 71.77% | 28.23% |
| Temperate Japonica | 333 | 77.78% | 22.22% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224279740 | T->C | INTERGENIC | None |