Detailed information of SNP:
|
SNP ID:
sf0224280092(Gbrowse)
Chromosome: chr02 Position: 24280092 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 89.75% | 10.25% |
| All Indica | 765 | 87.71% | 12.29% |
| All Japonica | 489 | 91.21% | 8.79% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 353 | 84.42% | 15.58% |
| Indica II | 205 | 88.78% | 11.22% |
| Indica Intermediate | 207 | 92.27% | 7.73% |
| Temperate Japonica | 328 | 89.63% | 10.37% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224280092 | G->A | INTERGENIC | None |