Detailed information of SNP:
|
SNP ID:
sf0224280936(Gbrowse)
Chromosome: chr02 Position: 24280936 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 91.65% | 8.35% |
| All Indica | 795 | 92.20% | 7.80% |
| All Japonica | 496 | 90.93% | 9.07% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 211 | 83.89% | 16.11% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 93 | 76.34% | 23.66% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224280936 | C->T | INTERGENIC | None |