Detailed information of SNP:
|
SNP ID:
sf0224281315(Gbrowse)
Chromosome: chr02 Position: 24281315 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 72.21% | 27.79% |
| All Indica | 788 | 77.54% | 22.46% |
| All Japonica | 488 | 64.34% | 35.66% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 371 | 77.09% | 22.91% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 205 | 63.41% | 36.59% |
| Temperate Japonica | 329 | 56.84% | 43.16% |
| Tropical Japonica | 91 | 81.32% | 18.68% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224281315 | G->A | INTERGENIC | None |