Detailed information of SNP:
|
SNP ID:
sf0224281449(Gbrowse)
Chromosome: chr02 Position: 24281449 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 96.17% | 3.83% |
| All Indica | 797 | 95.23% | 4.77% |
| All Japonica | 489 | 98.57% | 1.43% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 89.05% | 10.95% |
| Temperate Japonica | 331 | 98.49% | 1.51% |
| Tropical Japonica | 90 | 98.89% | 1.11% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224281449 | A->T | INTERGENIC | None |