Detailed information of SNP:
|
SNP ID:
sf0224282945(Gbrowse)
Chromosome: chr02 Position: 24282945 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 92.07% | 7.93% |
| All Indica | 769 | 94.41% | 5.59% |
| All Japonica | 487 | 89.94% | 10.06% |
| Aus | 64 | 81.25% | 18.75% |
| Indica I | 355 | 98.03% | 1.97% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 202 | 87.62% | 12.38% |
| Temperate Japonica | 326 | 89.88% | 10.12% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224282945 | G->A | INTERGENIC | None |