Detailed information of SNP:
|
SNP ID:
sf0224283263(Gbrowse)
Chromosome: chr02 Position: 24283263 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 93.22% | 6.78% |
| All Indica | 798 | 95.74% | 4.26% |
| All Japonica | 495 | 89.70% | 10.30% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 86.32% | 13.68% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 88.92% | 11.08% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224283263 | C->T | LOC_Os02g40120(LOC_Os02g40120.1) | INTRON |