Detailed information of SNP:
|
SNP ID:
sf0224286783(Gbrowse)
Chromosome: chr02 Position: 24286783 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 94.35% | 5.65% |
| All Indica | 798 | 95.61% | 4.39% |
| All Japonica | 496 | 91.53% | 8.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 94.92% | 5.08% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 93 | 72.04% | 27.96% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224286783 | C->T | INTERGENIC | None |