Detailed information of SNP:
|
SNP ID:
sf0224287687(Gbrowse)
Chromosome: chr02 Position: 24287687 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 92.24% | 7.76% |
| All Indica | 798 | 92.23% | 7.77% |
| All Japonica | 497 | 91.75% | 8.25% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 81.60% | 18.40% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 91.94% | 8.06% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224287687 | T->A | LOC_Os02g40130(LOC_Os02g40130.1) | Non-Synonymous SNP |