Detailed information of SNP:
|
SNP ID:
sf0224310027(Gbrowse)
Chromosome: chr02 Position: 24310027 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 95.81% | 4.19% |
| All Indica | 790 | 95.82% | 4.18% |
| All Japonica | 495 | 96.16% | 3.84% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 369 | 96.75% | 3.25% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 333 | 95.20% | 4.80% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224310027 | G->A | LOC_Os02g40180(LOC_Os02g40180.1) | Non-Synonymous SNP |