Detailed information of SNP:
|
SNP ID:
sf0224317589(Gbrowse)
Chromosome: chr02 Position: 24317589 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 89.35% | 10.65% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 496 | 79.64% | 20.36% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 334 | 73.65% | 26.35% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224317589 | T->A | LOC_Os02g40190(LOC_Os02g40190.1) | Synonymous |