Detailed information of SNP:
|
SNP ID:
sf0224337820(Gbrowse)
Chromosome: chr02 Position: 24337820 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1363 | 94.42% | 5.58% |
| All Indica | 776 | 93.30% | 6.70% |
| All Japonica | 474 | 96.20% | 3.80% |
| Aus | 58 | 96.55% | 3.45% |
| Indica I | 362 | 98.34% | 1.66% |
| Indica II | 211 | 86.73% | 13.27% |
| Indica Intermediate | 203 | 91.13% | 8.87% |
| Temperate Japonica | 320 | 99.38% | 0.62% |
| Tropical Japonica | 90 | 82.22% | 17.78% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224337820 | T->C | INTERGENIC | None |