Detailed information of SNP:
|
SNP ID:
sf0224375120(Gbrowse)
Chromosome: chr02 Position: 24375120 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 92.35% | 7.65% |
| All Indica | 795 | 89.18% | 10.82% |
| All Japonica | 495 | 97.58% | 2.42% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 371 | 85.18% | 14.82% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224375120 | T->C | LOC_Os02g40270(LOC_Os02g40270.1) | Non-Synonymous SNP |