Detailed information of SNP:
|
SNP ID:
sf0224376241(Gbrowse)
Chromosome: chr02 Position: 24376241 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 93.93% | 6.07% |
| All Indica | 786 | 96.44% | 3.56% |
| All Japonica | 491 | 89.41% | 10.59% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 370 | 98.38% | 1.62% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 203 | 93.10% | 6.90% |
| Temperate Japonica | 332 | 88.55% | 11.45% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 65 | 87.69% | 12.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224376241 | C->T | LOC_Os02g40270(LOC_Os02g40270.1) | INTRON |