Detailed information of SNP:
|
SNP ID:
sf0224376397(Gbrowse)
Chromosome: chr02 Position: 24376397 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 94.42% | 5.58% |
| All Indica | 798 | 97.24% | 2.76% |
| All Japonica | 495 | 89.90% | 10.10% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 334 | 88.92% | 11.08% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224376397 | T->C | LOC_Os02g40270(LOC_Os02g40270.1) | Synonymous |