Detailed information of SNP:
|
SNP ID:
sf0224376402(Gbrowse)
Chromosome: chr02 Position: 24376402 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 92.92% | 7.08% |
| All Indica | 793 | 89.28% | 10.72% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 369 | 91.06% | 8.94% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224376402 | T->G | LOC_Os02g40270(LOC_Os02g40270.1) | Non-Synonymous SNP |