Detailed information of SNP:
|
SNP ID:
sf0224376897(Gbrowse)
Chromosome: chr02 Position: 24376897 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 93.91% | 6.09% |
| All Indica | 793 | 98.74% | 1.26% |
| All Japonica | 496 | 84.88% | 15.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 334 | 82.04% | 17.96% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224376897 | A->G | INTERGENIC | None |