Detailed information of SNP:
|
SNP ID:
sf0224379239(Gbrowse)
Chromosome: chr02 Position: 24379239 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 94.70% | 5.30% |
| All Indica | 798 | 96.74% | 3.26% |
| All Japonica | 494 | 90.89% | 9.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 333 | 90.39% | 9.61% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224379239 | A->G | INTERGENIC | None |