Detailed information of SNP:
|
SNP ID:
sf0224379926(Gbrowse)
Chromosome: chr02 Position: 24379926 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 80.18% | 19.82% |
| All Indica | 792 | 75.51% | 24.49% |
| All Japonica | 494 | 89.27% | 10.73% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 371 | 73.85% | 26.15% |
| Indica II | 213 | 75.12% | 24.88% |
| Indica Intermediate | 208 | 78.85% | 21.15% |
| Temperate Japonica | 333 | 90.69% | 9.31% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224379926 | C->T | INTERGENIC | None |