Detailed information of SNP:
|
SNP ID:
sf0224381203(Gbrowse)
Chromosome: chr02 Position: 24381203 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 68.62% | 31.38% |
| All Indica | 794 | 71.91% | 28.09% |
| All Japonica | 485 | 61.03% | 38.97% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 372 | 63.98% | 36.02% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 209 | 67.46% | 32.54% |
| Temperate Japonica | 327 | 55.05% | 44.95% |
| Tropical Japonica | 93 | 78.49% | 21.51% |
| Japonica Intermediate | 65 | 66.15% | 33.85% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224381203 | G->A | INTERGENIC | None |