Detailed information of SNP:
|
SNP ID:
sf0224402595(Gbrowse)
Chromosome: chr02 Position: 24402595 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 97.32% | 2.68% |
| All Indica | 797 | 97.37% | 2.63% |
| All Japonica | 496 | 97.18% | 2.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224402595 | C->T | LOC_Os02g40320(LOC_Os02g40320.1) | Non-Synonymous SNP |