Detailed information of SNP:
|
SNP ID:
sf0224410245(Gbrowse)
Chromosome: chr02 Position: 24410245 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 94.07% | 5.93% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 495 | 93.33% | 6.67% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 333 | 93.99% | 6.01% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224410245 | T->G | INTERGENIC | None |