Detailed information of SNP:
|
SNP ID:
sf0224426388(Gbrowse)
Chromosome: chr02 Position: 24426388 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 79.94% | 20.06% |
| All Indica | 797 | 85.57% | 14.43% |
| All Japonica | 491 | 71.08% | 28.92% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 87.97% | 12.03% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 210 | 80.00% | 20.00% |
| Temperate Japonica | 330 | 69.70% | 30.30% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224426388 | T->C | LOC_Os02g40340(LOC_Os02g40340.2) | Synonymous |
| sf0224426388 | T->C | LOC_Os02g40340(LOC_Os02g40340.1) | Synonymous |