Detailed information of SNP:
|
SNP ID:
sf0224426556(Gbrowse)
Chromosome: chr02 Position: 24426556 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 94.57% | 5.43% |
| All Indica | 798 | 92.98% | 7.02% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 89.57% | 10.43% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224426556 | T->C | LOC_Os02g40340(LOC_Os02g40340.2) | Synonymous |
| sf0224426556 | T->C | LOC_Os02g40340(LOC_Os02g40340.1) | Synonymous |