Detailed information of SNP:
|
SNP ID:
sf0224428945(Gbrowse)
Chromosome: chr02 Position: 24428945 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1332 | 68.47% | 31.53% |
| All Indica | 751 | 67.24% | 32.76% |
| All Japonica | 463 | 69.33% | 30.67% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 341 | 62.46% | 37.54% |
| Indica II | 211 | 77.73% | 22.27% |
| Indica Intermediate | 199 | 64.32% | 35.68% |
| Temperate Japonica | 310 | 67.74% | 32.26% |
| Tropical Japonica | 90 | 70.00% | 30.00% |
| Japonica Intermediate | 63 | 76.19% | 23.81% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224428945 | G->A | LOC_Os02g40340(LOC_Os02g40340.2) | INTRON |
| sf0224428945 | G->A | LOC_Os02g40340(LOC_Os02g40340.1) | INTRON |