Detailed information of SNP:
|
SNP ID:
sf0224453487(Gbrowse)
Chromosome: chr02 Position: 24453487 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1383 | 56.33% | 43.67% |
| All Indica | 778 | 49.61% | 50.39% |
| All Japonica | 484 | 63.22% | 36.78% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 359 | 44.29% | 55.71% |
| Indica II | 211 | 65.40% | 34.60% |
| Indica Intermediate | 208 | 42.79% | 57.21% |
| Temperate Japonica | 327 | 60.55% | 39.45% |
| Tropical Japonica | 93 | 65.59% | 34.41% |
| Japonica Intermediate | 64 | 73.44% | 26.56% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224453487 | C->T | INTERGENIC | None |