Detailed information of SNP:
|
SNP ID:
sf0224465489(Gbrowse)
Chromosome: chr02 Position: 24465489 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 51.55% | 48.45% |
| All Indica | 798 | 41.98% | 58.02% |
| All Japonica | 497 | 67.20% | 32.80% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 374 | 52.67% | 47.33% |
| Indica II | 213 | 31.92% | 68.08% |
| Indica Intermediate | 211 | 33.18% | 66.82% |
| Temperate Japonica | 335 | 68.66% | 31.34% |
| Tropical Japonica | 94 | 48.94% | 51.06% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224465489 | T->A | INTERGENIC | None |