Detailed information of SNP:
|
SNP ID:
sf0224467446(Gbrowse)
Chromosome: chr02 Position: 24467446 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 68.88% | 31.12% |
| All Indica | 796 | 81.53% | 18.47% |
| All Japonica | 496 | 50.00% | 50.00% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 374 | 89.04% | 10.96% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 209 | 79.90% | 20.10% |
| Temperate Japonica | 334 | 51.80% | 48.20% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224467446 | T->C | LOC_Os02g40410(LOC_Os02g40410.3) | Synonymous |
| sf0224467446 | T->C | LOC_Os02g40410(LOC_Os02g40410.1) | Synonymous |
| sf0224467446 | T->C | LOC_Os02g40410(LOC_Os02g40410.2) | Synonymous |