Detailed information of SNP:
|
SNP ID:
sf0224471863(Gbrowse)
Chromosome: chr02 Position: 24471863 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 85.25% | 14.75% |
| All Indica | 791 | 93.55% | 6.45% |
| All Japonica | 477 | 72.12% | 27.88% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 208 | 81.25% | 18.75% |
| Indica Intermediate | 209 | 94.74% | 5.26% |
| Temperate Japonica | 321 | 71.96% | 28.04% |
| Tropical Japonica | 92 | 76.09% | 23.91% |
| Japonica Intermediate | 64 | 67.19% | 32.81% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224471863 | A->C | INTERGENIC | None |