Detailed information of SNP:
|
SNP ID:
sf0224471948(Gbrowse)
Chromosome: chr02 Position: 24471948 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 91.28% | 8.72% |
| All Indica | 798 | 95.11% | 4.89% |
| All Japonica | 489 | 85.07% | 14.93% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 329 | 82.07% | 17.93% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 66 | 86.36% | 13.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224471948 | G->A | INTERGENIC | None |