Detailed information of SNP:
|
SNP ID:
sf0224472682(Gbrowse)
Chromosome: chr02 Position: 24472682 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 96.47% | 3.53% |
| All Indica | 797 | 95.11% | 4.89% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224472682 | C->A | INTERGENIC | None |