Detailed information of SNP:
|
SNP ID:
sf0224474679(Gbrowse)
Chromosome: chr02 Position: 24474679 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 83.71% | 16.29% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 496 | 64.92% | 35.08% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 334 | 61.98% | 38.02% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224474679 | G->A | INTERGENIC | None |