Detailed information of SNP:
|
SNP ID:
sf0224474914(Gbrowse)
Chromosome: chr02 Position: 24474914 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 83.53% | 16.47% |
| All Indica | 796 | 91.33% | 8.67% |
| All Japonica | 496 | 70.56% | 29.44% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 211 | 83.89% | 16.11% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 334 | 64.67% | 35.33% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224474914 | T->C | INTERGENIC | None |