Detailed information of SNP:
|
SNP ID:
sf0224489921(Gbrowse)
Chromosome: chr02 Position: 24489921 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 72.34% | 27.66% |
| All Indica | 798 | 63.66% | 36.34% |
| All Japonica | 496 | 81.65% | 18.35% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 57.07% | 42.93% |
| Indica II | 213 | 69.48% | 30.52% |
| Indica Intermediate | 210 | 69.52% | 30.48% |
| Temperate Japonica | 335 | 81.79% | 18.21% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224489921 | G->A | LOC_Os02g40430(LOC_Os02g40430.1) | Synonymous |