Detailed information of SNP:
|
SNP ID:
sf0224498780(Gbrowse)
Chromosome: chr02 Position: 24498780 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 80.44% | 19.56% |
| All Indica | 797 | 81.93% | 18.07% |
| All Japonica | 496 | 74.80% | 25.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 85.07% | 14.93% |
| Indica II | 211 | 86.26% | 13.74% |
| Indica Intermediate | 211 | 72.04% | 27.96% |
| Temperate Japonica | 335 | 69.85% | 30.15% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224498780 | G->A | INTERGENIC | None |