Detailed information of SNP:
|
SNP ID:
sf0224502470(Gbrowse)
Chromosome: chr02 Position: 24502470 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 85.64% | 14.36% |
| All Indica | 795 | 90.82% | 9.18% |
| All Japonica | 488 | 76.23% | 23.77% |
| Aus | 61 | 90.16% | 9.84% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 208 | 84.62% | 15.38% |
| Temperate Japonica | 327 | 76.15% | 23.85% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224502470 | C->T | INTERGENIC | None |