Detailed information of SNP:
|
SNP ID:
sf0224502583(Gbrowse)
Chromosome: chr02 Position: 24502583 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 95.38% | 4.62% |
| All Indica | 791 | 94.56% | 5.44% |
| All Japonica | 494 | 98.79% | 1.21% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 372 | 98.66% | 1.34% |
| Indica II | 212 | 86.32% | 13.68% |
| Indica Intermediate | 207 | 95.65% | 4.35% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224502583 | G->A | INTERGENIC | None |